Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013151.1 Corchorus olitorius cultivar O-4 contig13184, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31095

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8326--8389
27
2.3
28
84
7
78
45
17
4
32
1.69
8326--8382
27
2.1
27
87
3
80
43
15
3
36
1.64
8419--8474
29
2.0
28
89
3
85
37
8
14
39
1.77
8748--8787
15
2.6
16
88
4
55
62
12
10
15
1.54
10973--11066
31
3.1
30
77
10
86
29
22
11
36
1.90
11352--11387
17
2.1
17
89
0
54
30
11
19
38
1.86
13933--14001
18
3.8
18
78
0
84
17
30
26
26
1.97
19855--20012
27
6.3
26
73
20
117
24
8
3
63
1.37
19860--20012
49
3.2
49
92
6
267
24
7
3
64
1.36
19852--20023
46
3.7
46
93
5
292
24
8
2
63
1.36
24360--24406
14
3.5
13
80
11
51
78
14
2
4
0.99
24360--24406
20
2.3
20
85
7
60
78
14
2
4
0.99
24364--24406
6
6.7
6
82
12
50
79
13
2
4
1.00
25889--25997
54
2.0
54
96
0
200
25
16
22
35
1.94
28528--28559
15
2.1
15
100
0
64
53
28
0
18
1.45
29779--29858
29
2.7
30
82
3
90
28
16
12
42
1.84
30007--30097
31
2.9
32
93
3
150
46
10
13
29
1.77
30137--30169
8
4.2
8
88
7
50
0
18
0
81
0.68
30256--30495
126
1.9
126
84
6
326
52
1
10
35
1.44

Tables:   1

The End!