genome.fa.s13157.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013157.1 Corchorus olitorius cultivar O-4 contig13190, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85792

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4164--4241	25	3.0	26	86	5	113	17	20	25	35	1.95
4666--4691	2	13.0	2	100	0	52	50	0	0	50	1.00
13143--13177	16	2.2	16	94	0	61	48	17	22	11	1.79
13273--13468	41	4.7	41	84	5	234	36	19	14	29	1.92
13273--13469	85	2.4	83	84	6	240	36	20	14	29	1.92
13696--14481	400	2.0	399	95	0	1401	36	18	16	27	1.93
16434--16468	16	2.2	16	100	0	70	45	11	25	17	1.81
16564--16764	41	4.9	41	83	5	226	36	21	13	28	1.91
16574--16764	85	2.3	83	82	7	228	37	21	13	27	1.91
19738--19791	18	3.0	18	82	17	76	27	1	18	51	1.56
19737--19790	17	3.1	16	82	17	72	25	1	18	53	1.54
22642--22682	16	2.5	17	76	15	50	4	14	36	43	1.67
32314--32778	36	13.2	35	84	6	530	17	21	20	40	1.92
32384--32441	30	2.1	27	81	12	64	15	22	20	41	1.90
33282--33465	38	4.8	38	91	0	287	19	14	20	46	1.84
33288--33465	76	2.3	76	98	0	338	19	14	20	46	1.84
33431--33582	30	5.1	30	91	0	250	19	13	19	48	1.81
39373--39498	27	4.7	27	88	1	173	39	28	14	17	1.89
42262--42841	295	2.0	293	88	2	878	24	15	17	42	1.88
43524--43566	16	2.7	15	82	10	50	79	2	16	2	0.95
60151--60262	59	1.9	59	96	0	206	41	15	16	25	1.88
65836--65873	19	2.0	19	100	0	76	36	15	21	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66464--66544	41	2.0	41	100	0	162	7	17	33	41	1.77
66504--66705	103	2.0	103	93	0	350	17	17	27	37	1.93
69741--69995	125	2.0	128	89	7	394	37	10	1	50	1.48
69981--70019	14	2.9	13	80	3	51	41	2	2	53	1.28
76386--76432	18	2.6	18	80	12	53	76	14	8	0	1.01
78107--78439	40	8.4	41	86	7	424	32	15	16	36	1.89
78092--78439	119	2.9	119	90	3	499	33	14	15	36	1.89
84296--84330	2	17.5	2	100	0	70	48	0	0	51	1.00
85029--85398	58	6.3	58	94	1	650	38	14	21	25	1.92
85029--85398	118	3.2	116	93	1	650	38	14	21	25	1.92
85017--85391	176	2.1	177	95	1	666	38	14	21	25	1.91
85416--85489	29	2.5	30	88	6	114	29	24	12	33	1.91

Tables:   1

The End!