Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013161.1 Corchorus olitorius cultivar O-4 contig13194, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35758

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5633--5668
2
18.5
2
94
5
65
52
0
0
47
1.00
5666--5718
6
9.2
6
88
12
76
49
15
0
35
1.45
5666--5718
19
3.1
18
87
12
76
49
15
0
35
1.45
5654--5712
25
2.4
23
82
17
75
49
11
0
38
1.40
5636--5712
8
8.2
10
79
15
53
49
9
0
41
1.34
5644--5718
14
5.1
15
77
22
63
49
10
0
40
1.38
9507--9547
19
2.1
20
86
4
57
21
2
4
70
1.18
13173--13260
32
2.8
32
92
0
140
38
29
5
26
1.79
19961--20000
15
2.6
16
88
4
55
15
10
12
62
1.54
23765--23819
22
2.5
22
77
16
60
38
21
7
32
1.81
23836--23971
22
6.1
22
66
10
71
37
13
10
38
1.80
23986--24069
23
3.7
23
83
3
98
41
13
8
36
1.74
23994--24577
22
27.1
22
69
15
174
36
16
8
37
1.80
24508--24573
21
3.1
21
75
18
64
39
10
9
40
1.71
24550--24604
28
1.9
29
89
10
87
40
7
10
41
1.68
24580--24704
22
5.7
22
73
10
94
40
19
5
35
1.75
24705--24803
22
4.4
22
81
9
110
36
15
8
40
1.76
24663--24904
98
2.4
102
84
4
305
36
17
7
38
1.78
24864--25060
22
9.0
22
74
10
172
37
16
10
35
1.83
24842--25058
44
4.9
44
76
13
155
37
16
10
35
1.82
24864--25060
65
3.0
63
75
10
184
37
16
10
35
1.83
34203--34269
21
3.2
21
66
16
57
52
11
1
34
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34383--34795
203
2.0
202
89
7
633
36
11
8
43
1.71

Tables:   1

The End!