Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01013162.1 Corchorus olitorius cultivar O-4 contig13195, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67640
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Found at i:3232 original size:21 final size:21
Alignment explanation
Indices: 3208--3254 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
3198 TTTGAAAAAG
* *
3208 TAGAAAAAGTGCTATAACGGC
1 TAGAAAAAGAGCTACAACGGC
*
3229 TAG-AAAAGAGCTCCAACGGC
1 TAGAAAAAGAGCTACAACGGC
3249 TAGAAA
1 TAGAAA
3255 CTTGTGAGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 17 0.77
21 5 0.23
ACGTcount: A:0.45, C:0.17, G:0.23, T:0.15
Consensus pattern (21 bp):
TAGAAAAAGAGCTACAACGGC
Found at i:4266 original size:11 final size:11
Alignment explanation
Indices: 4224--4266 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
4214 TAACTATTAC
4224 TTAACCATAGA
1 TTAACCATAGA
*
4235 CTAACCATAGA
1 TTAACCATAGA
* *
4246 TTAACTATAGC
1 TTAACCATAGA
*
4257 TTGACCATAG
1 TTAACCATAG
4267 GTTAGTAACA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.40, C:0.21, G:0.12, T:0.28
Consensus pattern (11 bp):
TTAACCATAGA
Found at i:4316 original size:21 final size:20
Alignment explanation
Indices: 4291--4329 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
4281 AGTAACAGAT
*
4291 TAACTGACTATATCTAACAAC
1 TAACTAACTA-ATCTAACAAC
*
4312 TAACTAACTACTCTAACA
1 TAACTAACTAATCTAACA
4330 TGAATGGAGA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.44, C:0.26, G:0.03, T:0.28
Consensus pattern (20 bp):
TAACTAACTAATCTAACAAC
Found at i:7173 original size:31 final size:31
Alignment explanation
Indices: 7139--7255 Score: 162
Period size: 31 Copynumber: 3.8 Consensus size: 31
7129 GCATGCCATG
* * * *
7139 TGTATCAAAAAGCGACACATGGCACGCCACG
1 TGTACCAAAAAGTGACACGTGGCACGCCACA
* *
7170 TGTACTAAAAAGTGACACGTGGCACACCACA
1 TGTACCAAAAAGTGACACGTGGCACGCCACA
* *
7201 TGTACCAAAAAGTGACACGTGTCACGCCATA
1 TGTACCAAAAAGTGACACGTGGCACGCCACA
7232 TGTACCAAAAAGTGACACGTGGCA
1 TGTACCAAAAAGTGACACGTGGCA
7256 TGTCTCGTGC
Statistics
Matches: 75, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 75 1.00
ACGTcount: A:0.37, C:0.26, G:0.21, T:0.16
Consensus pattern (31 bp):
TGTACCAAAAAGTGACACGTGGCACGCCACA
Found at i:11719 original size:31 final size:31
Alignment explanation
Indices: 11681--11741 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
11671 AAAGGCTATC
*
11681 AGAGTGATGGATTAAGTTCTTCTCAGTCATA
1 AGAGTGATGGATTAAGTTCCTCTCAGTCATA
11712 AGAGTGATGGATTAAGTTCCTCTCAGTCAT
1 AGAGTGATGGATTAAGTTCCTCTCAGTCAT
11742 GATTTGGTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (31 bp):
AGAGTGATGGATTAAGTTCCTCTCAGTCATA
Found at i:14627 original size:6 final size:6
Alignment explanation
Indices: 14616--14652 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
14606 TGGTTTAGCC
14616 TTTTCT TTTTC- TTTTCT TTTTC- TTTTCT TTTTCT TTT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTT
14653 CGTATTTTAC
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 10 0.34
6 19 0.66
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTCT
Found at i:14630 original size:5 final size:5
Alignment explanation
Indices: 14615--14653 Score: 51
Period size: 5 Copynumber: 7.2 Consensus size: 5
14605 TTGGTTTAGC
14615 CTTTT CTTTTT CTTTT CTTTTT CTTTT CTTTTT CTTTT C
1 CTTTT C-TTTT CTTTT C-TTTT CTTTT C-TTTT CTTTT C
14654 GTATTTTACA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
5 16 0.52
6 15 0.48
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (5 bp):
CTTTT
Found at i:14631 original size:11 final size:11
Alignment explanation
Indices: 14615--14653 Score: 78
Period size: 11 Copynumber: 3.5 Consensus size: 11
14605 TTGGTTTAGC
14615 CTTTTCTTTTT
1 CTTTTCTTTTT
14626 CTTTTCTTTTT
1 CTTTTCTTTTT
14637 CTTTTCTTTTT
1 CTTTTCTTTTT
14648 CTTTTC
1 CTTTTC
14654 GTATTTTACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (11 bp):
CTTTTCTTTTT
Found at i:15235 original size:13 final size:13
Alignment explanation
Indices: 15217--15243 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
15207 AAACGGAAAA
15217 TCCAGAAGTGCTT
1 TCCAGAAGTGCTT
15230 TCCAGAAGTGCTT
1 TCCAGAAGTGCTT
15243 T
1 T
15244 TTAGTTGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.33
Consensus pattern (13 bp):
TCCAGAAGTGCTT
Found at i:31503 original size:41 final size:41
Alignment explanation
Indices: 31458--31540 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
31448 TTTATCCTCG
31458 AGGGAAATAAGGTTACAGAATAAAATGTAAAGCAGGTGAAT
1 AGGGAAATAAGGTTACAGAATAAAATGTAAAGCAGGTGAAT
31499 AGGGAAATAAGGTTACAGAATAAAATGTAAAGCAGGTGAAT
1 AGGGAAATAAGGTTACAGAATAAAATGTAAAGCAGGTGAAT
31540 A
1 A
31541 AACTAAGTTA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.49, C:0.05, G:0.27, T:0.19
Consensus pattern (41 bp):
AGGGAAATAAGGTTACAGAATAAAATGTAAAGCAGGTGAAT
Found at i:33350 original size:23 final size:23
Alignment explanation
Indices: 33323--33367 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
33313 TACGCTATCT
33323 TTTCTTTCCTTTTCTTTATTTTC
1 TTTCTTTCCTTTTCTTTATTTTC
* * *
33346 TTTCTTTCTTTTTTTTTTTTTT
1 TTTCTTTCCTTTTCTTTATTTT
33368 TTTGCCCAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.82
Consensus pattern (23 bp):
TTTCTTTCCTTTTCTTTATTTTC
Found at i:33363 original size:19 final size:19
Alignment explanation
Indices: 33322--33360 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
33312 TTACGCTATC
33322 TTTTCTTTCCTTTTCTTTA
1 TTTTCTTTCCTTTTCTTTA
33341 TTTTCTTT-C-TTTCTTT-
1 TTTTCTTTCCTTTTCTTTA
33357 TTTT
1 TTTT
33361 TTTTTTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 4 0.20
17 7 0.35
18 1 0.05
19 8 0.40
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79
Consensus pattern (19 bp):
TTTTCTTTCCTTTTCTTTA
Found at i:37537 original size:36 final size:36
Alignment explanation
Indices: 37487--37560 Score: 112
Period size: 36 Copynumber: 2.1 Consensus size: 36
37477 GCAGACTGCT
* *
37487 TAAAATCTGTTGTATAGTCAGATGAACAGGAATATA
1 TAAAAGCTGCTGTATAGTCAGATGAACAGGAATATA
* *
37523 TAAAAGCTGCTGTATGGTCAGATGAACAGGTATATA
1 TAAAAGCTGCTGTATAGTCAGATGAACAGGAATATA
37559 TA
1 TA
37561 TCATCCATAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.39, C:0.09, G:0.22, T:0.30
Consensus pattern (36 bp):
TAAAAGCTGCTGTATAGTCAGATGAACAGGAATATA
Found at i:45451 original size:2 final size:2
Alignment explanation
Indices: 45444--45483 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
45434 ATCCTAGTGT
45444 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
45484 AAAGTTTTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:51123 original size:19 final size:19
Alignment explanation
Indices: 51099--51135 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
51089 CTTATCTGTA
51099 ACCGTTTCA-CTACCGTTTG
1 ACCGTTTCATC-ACCGTTTG
51118 ACCGTTTCATCACCGTTT
1 ACCGTTTCATCACCGTTT
51136 TGGGTCCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 16 0.94
20 1 0.06
ACGTcount: A:0.16, C:0.32, G:0.14, T:0.38
Consensus pattern (19 bp):
ACCGTTTCATCACCGTTTG
Found at i:51310 original size:13 final size:13
Alignment explanation
Indices: 51292--51316 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51282 CACGCAGCCT
51292 TAGTCAATACAAC
1 TAGTCAATACAAC
51305 TAGTCAATACAA
1 TAGTCAATACAA
51317 TAGCAATTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.20, G:0.08, T:0.24
Consensus pattern (13 bp):
TAGTCAATACAAC
Found at i:52409 original size:45 final size:45
Alignment explanation
Indices: 52329--52415 Score: 113
Period size: 45 Copynumber: 1.9 Consensus size: 45
52319 ACGATTTAAA
**
52329 AAACTTAACTGCTAAGTCTTTACGTATTTAATTAAAGACAAGTAG
1 AAACTTAACTGCTAAGTCTTTACGTACGTAATTAAAGACAAGTAG
* * *
52374 AAACTTAACTGCTAAGTC-TTCCTTTACGTATTTAAAGACAAG
1 AAACTTAACTGCTAAGTCTTTAC-GTACGTAATTAAAGACAAG
52416 CAGACCACTG
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
44 3 0.08
45 33 0.92
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.33
Consensus pattern (45 bp):
AAACTTAACTGCTAAGTCTTTACGTACGTAATTAAAGACAAGTAG
Found at i:54585 original size:57 final size:57
Alignment explanation
Indices: 54497--54612 Score: 223
Period size: 57 Copynumber: 2.0 Consensus size: 57
54487 TCAATTACAA
*
54497 AACCAATGACCTTTTTAATAATTTAAGTCCACCATTAAAAAGTTGAATCTGAAAGTG
1 AACCAATGACCTTTTAAATAATTTAAGTCCACCATTAAAAAGTTGAATCTGAAAGTG
54554 AACCAATGACCTTTTAAATAATTTAAGTCCACCATTAAAAAGTTGAATCTGAAAGTG
1 AACCAATGACCTTTTAAATAATTTAAGTCCACCATTAAAAAGTTGAATCTGAAAGTG
54611 AA
1 AA
54613 ACAAGCCAGA
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 58 1.00
ACGTcount: A:0.42, C:0.16, G:0.12, T:0.30
Consensus pattern (57 bp):
AACCAATGACCTTTTAAATAATTTAAGTCCACCATTAAAAAGTTGAATCTGAAAGTG
Found at i:57031 original size:33 final size:33
Alignment explanation
Indices: 56989--57051 Score: 117
Period size: 33 Copynumber: 1.9 Consensus size: 33
56979 ATACTACCTT
56989 GCATATTAGTGGCACCTAAAGTTGTCACATCAA
1 GCATATTAGTGGCACCTAAAGTTGTCACATCAA
*
57022 GCATATTAGTGGCACCTGAAGTTGTCACAT
1 GCATATTAGTGGCACCTAAAGTTGTCACAT
57052 AAAAAATATA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.29
Consensus pattern (33 bp):
GCATATTAGTGGCACCTAAAGTTGTCACATCAA
Found at i:57101 original size:29 final size:29
Alignment explanation
Indices: 57059--57119 Score: 113
Period size: 29 Copynumber: 2.1 Consensus size: 29
57049 CATAAAAAAT
57059 ATAGTATCACTTTGACACCCGAAGTTGTC
1 ATAGTATCACTTTGACACCCGAAGTTGTC
*
57088 ATAGTATCATTTTGACACCCGAAGTTGTC
1 ATAGTATCACTTTGACACCCGAAGTTGTC
57117 ATA
1 ATA
57120 TTAAGGATGT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (29 bp):
ATAGTATCACTTTGACACCCGAAGTTGTC
Found at i:57215 original size:54 final size:54
Alignment explanation
Indices: 57139--57247 Score: 182
Period size: 54 Copynumber: 2.0 Consensus size: 54
57129 TAAATATTTG
* * *
57139 TTTAATTGTTGTCAAAGTTTGACACCCGAAGTTGTCATACTATCCACTTAAAAC
1 TTTAATTGTTGCCAAAGTTTGACACCCAAAATTGTCATACTATCCACTTAAAAC
*
57193 TTTAATTGTTGCCAAAGTTTGACACCCAAAATTGTCATACTATCCACTTTAAAC
1 TTTAATTGTTGCCAAAGTTTGACACCCAAAATTGTCATACTATCCACTTAAAAC
57247 T
1 T
57248 ATATATATGT
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.36
Consensus pattern (54 bp):
TTTAATTGTTGCCAAAGTTTGACACCCAAAATTGTCATACTATCCACTTAAAAC
Found at i:58607 original size:35 final size:35
Alignment explanation
Indices: 58503--58599 Score: 158
Period size: 35 Copynumber: 2.8 Consensus size: 35
58493 TCGGGTAGTG
* *
58503 CAAATTTGATTGAAAGTTCCAGAAGAGCCAGTATT
1 CAAATTTGATTGAAGGCTCCAGAAGAGCCAGTATT
58538 CAAATTTGATTGAAGGCTCCAGAAGAGCCAGTATT
1 CAAATTTGATTGAAGGCTCCAGAAGAGCCAGTATT
* *
58573 CAAATTTCATTGAAGGCTCTAGAAGAG
1 CAAATTTGATTGAAGGCTCCAGAAGAG
58600 TTAGTATTGT
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 58 1.00
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.27
Consensus pattern (35 bp):
CAAATTTGATTGAAGGCTCCAGAAGAGCCAGTATT
Found at i:60067 original size:15 final size:15
Alignment explanation
Indices: 60043--60073 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
60033 GGATAAGATT
60043 ACTCCAGAAGAGTCC
1 ACTCCAGAAGAGTCC
*
60058 ACTCCTGAAGAGTCC
1 ACTCCAGAAGAGTCC
60073 A
1 A
60074 TAGACATAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.32, G:0.19, T:0.16
Consensus pattern (15 bp):
ACTCCAGAAGAGTCC
Found at i:62065 original size:2 final size:2
Alignment explanation
Indices: 62058--62088 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
62048 AAAAGGTACG
62058 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
62089 CAGAATAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:65558 original size:35 final size:34
Alignment explanation
Indices: 65502--65574 Score: 103
Period size: 35 Copynumber: 2.1 Consensus size: 34
65492 GCTTTGAGGT
*
65502 GGTTTGGGTTTTGGTTTGATGGGTT-ATGTAGTTG
1 GGTTTGGGCTTTGGTTTGATGGGTTAAT-TAGTTG
*
65536 GGTTTGGGCTTTGATTTTGATGGGTTAATTAGTTG
1 GGTTTGGGCTTTG-GTTTGATGGGTTAATTAGTTG
65571 GGTT
1 GGTT
65575 AGTTTTATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
34 12 0.34
35 21 0.60
36 2 0.06
ACGTcount: A:0.11, C:0.01, G:0.38, T:0.49
Consensus pattern (34 bp):
GGTTTGGGCTTTGGTTTGATGGGTTAATTAGTTG
Found at i:66285 original size:35 final size:34
Alignment explanation
Indices: 66201--66339 Score: 197
Period size: 35 Copynumber: 4.0 Consensus size: 34
66191 AAATTTCATC
* *
66201 AAGTTTTTTAATTGGGAAAGTTCTCACCAGTTTT
1 AAGTTTTTAAATTGGGAAAGTTCCCACCAGTTTT
66235 AAGTTTTTAAATTGGGAAAGTTCCCACCAGTTTT
1 AAGTTTTTAAATTGGGAAAGTTCCCACCAGTTTT
* *
66269 AAGTCTTTTAAATTGGGAAAGTCCCCATCAGCTTTT
1 AAGT-TTTTAAATTGGGAAAGTTCCCACCAG-TTTT
* *
66305 AAGTTTTCAAATTGGGAAAGTTCCCATTCAGTTTT
1 AAGTTTTTAAATTGGGAAAGTTCCCA-CCAGTTTT
66340 TCAAAGTTCC
Statistics
Matches: 96, Mismatches: 6, Indels: 5
0.90 0.06 0.05
Matches are distributed among these distances:
34 36 0.38
35 48 0.50
36 12 0.12
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.40
Consensus pattern (34 bp):
AAGTTTTTAAATTGGGAAAGTTCCCACCAGTTTT
Found at i:66358 original size:21 final size:21
Alignment explanation
Indices: 66321--66360 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
66311 TCAAATTGGG
*
66321 AAAGTTCCCATTCAGTTTTTC
1 AAAGTTCCCATCCAGTTTTTC
66342 AAAGTTCCCA-CCAAGTTTT
1 AAAGTTCCCATCC-AGTTTT
66361 AGTTTTCAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.28, C:0.25, G:0.10, T:0.38
Consensus pattern (21 bp):
AAAGTTCCCATCCAGTTTTTC
Found at i:67008 original size:14 final size:14
Alignment explanation
Indices: 66989--67033 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
66979 TGATTCAATG
*
66989 CTAACTCCTAAGTT
1 CTAACTCCTAAGTC
*
67003 CTAACTCCTAAATC
1 CTAACTCCTAAGTC
*
67017 CTAA-TCCTAAGGC
1 CTAACTCCTAAGTC
67030 CTAA
1 CTAA
67034 GCTATAAAGC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
13 11 0.41
14 16 0.59
ACGTcount: A:0.33, C:0.31, G:0.07, T:0.29
Consensus pattern (14 bp):
CTAACTCCTAAGTC
Done.