Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013164.1 Corchorus olitorius cultivar O-4 contig13197, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41381

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1538--1584
20
2.3
20
96
0
85
51
8
10
29
1.66
1627--1685
29
2.0
29
100
0
118
47
20
11
20
1.81
2944--2972
14
2.0
15
93
6
51
13
41
20
24
1.89
3074--3117
23
1.9
23
100
0
88
18
31
0
50
1.47
3074--3125
23
2.2
23
89
3
77
25
26
1
46
1.63
7231--7272
22
1.9
22
95
0
75
23
7
7
61
1.47
8846--8872
12
2.2
12
100
0
54
33
14
22
29
1.94
26581--27098
268
1.9
268
98
0
1000
33
16
20
29
1.95
28822--28946
49
2.6
48
81
9
148
29
16
5
48
1.68
32840--32879
20
2.0
20
100
0
80
35
5
0
60
1.19
34141--34186
23
2.0
23
82
0
56
39
2
0
58
1.10
37002--37039
18
2.1
18
85
9
51
26
15
5
52
1.64

Tables:   1

The End!