Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013173.1 Corchorus olitorius cultivar O-4 contig13206, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35219

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36--76
2
20.5
2
100
0
82
48
0
0
51
1.00
4265--4354
36
2.5
36
100
0
180
38
10
5
45
1.61
5060--5084
8
3.1
8
100
0
50
16
0
36
48
1.46
6540--6595
22
2.5
22
91
0
85
3
41
0
55
1.17
17728--18501
390
2.0
391
96
0
1415
28
23
15
31
1.96
19756--19860
33
3.2
31
83
11
120
43
23
7
24
1.80
29047--29092
16
2.9
16
78
12
58
23
28
6
41
1.79
29047--29099
16
3.3
16
75
15
56
26
26
5
41
1.78
30334--30359
13
2.0
13
100
0
52
30
7
15
46
1.74
32353--32388
11
3.4
11
84
7
56
80
0
19
0
0.71
32795--33004
105
2.0
105
92
0
348
40
10
6
42
1.65
33218--33568
121
3.0
118
88
8
504
34
24
7
32
1.85
34352--34572
2
110.5
2
97
0
379
50
46
0
3
1.17
34984--35087
43
2.4
45
76
9
117
39
12
11
36
1.79
34960--35125
65
2.6
65
78
7
176
38
10
14
36
1.81
34909--35189
22
12.9
22
71
9
128
36
9
18
34
1.84

Tables:   1

The End!