Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013178.1 Corchorus olitorius cultivar O-4 contig13211, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52114

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6572--6597
11
2.4
11
100
0
52
7
15
7
69
1.35
7842--7989
70
2.1
70
92
2
244
24
29
19
27
1.99
12195--12467
51
5.5
51
83
11
331
19
23
19
37
1.94
12339--12917
41
13.9
41
78
9
555
16
25
21
36
1.94
12339--12924
164
3.5
164
83
6
655
16
25
21
37
1.93
17642--17677
19
1.9
18
88
5
54
27
22
8
41
1.82
21281--21334
26
2.1
26
100
0
108
53
3
3
38
1.36
30624--30675
26
2.0
26
96
0
95
32
19
17
30
1.95
36389--36429
20
2.0
20
95
0
73
17
34
17
31
1.93
36695--36929
50
4.7
50
92
2
368
42
19
8
28
1.81
36898--36963
34
2.0
33
96
3
123
42
24
7
25
1.81
36850--37010
83
1.9
84
92
3
272
41
21
8
27
1.83
37077--37141
18
3.3
18
76
19
67
29
53
4
12
1.58
37072--37125
23
2.3
23
93
0
90
31
53
1
12
1.50
39959--40112
22
7.1
22
80
2
195
13
22
7
56
1.62
39959--40112
65
2.4
65
82
3
193
13
22
7
56
1.62
39963--40112
43
3.5
43
89
2
221
14
22
7
56
1.62
40103--40850
47
15.5
47
84
5
694
26
20
5
48
1.70
40198--40769
296
1.9
296
91
0
939
27
19
5
47
1.70
43232--43271
21
1.9
21
94
0
71
25
12
22
40
1.89
43301--43327
14
1.9
14
100
0
54
48
14
0
37
1.45
44460--44549
47
1.9
47
90
4
146
20
36
23
20
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45072--45168
45
2.2
45
86
1
133
37
21
6
35
1.79
45831--45856
13
2.0
13
100
0
52
15
0
7
76
0.99
47965--47994
2
15.0
2
100
0
60
50
0
0
50
1.00
48128--48152
13
1.9
13
100
0
50
60
8
16
16
1.58

Tables:   1

The End!