Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013182.1 Corchorus olitorius cultivar O-4 contig13215, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11814
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31


Found at i:2143 original size:15 final size:16

Alignment explanation


    Indices: 2113--2145  Score: 59
    Period size: 16  Copynumber: 2.1  Consensus size: 16

       2103 TTACTTTGCT

                            
       2113 TTGTTTTCTAGTTTAA
          1 TTGTTTTCTAGTTTAA

                            
       2129 TTGTTTTCT-GTTTAA
          1 TTGTTTTCTAGTTTAA

              
       2144 TT
          1 TT

       2146 ACTTTCTGTC


Statistics
Matches: 17,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  15    8  0.47
  16    9  0.53

ACGTcount: A:0.15, C:0.06, G:0.12, T:0.67


Consensus pattern (16 bp):   
TTGTTTTCTAGTTTAA

Found at i:8081 original size:21 final size:19

Alignment explanation


    Indices: 8056--8099  Score: 61
    Period size: 21  Copynumber: 2.2  Consensus size: 19

       8046 AAAAGTAACT

                                 
       8056 AAGAAAAATAAACAAAAAGAA
          1 AAGAAAAAT-AACAAAAA-AA

                        *      
       8077 AAGAAAAATAACGAAAAAA
          1 AAGAAAAATAACAAAAAAA

                
       8096 AAGA
          1 AAGA

       8100 TAAGGGTAAG


Statistics
Matches: 22,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  19    6  0.27
  20    7  0.32
  21    9  0.41

ACGTcount: A:0.80, C:0.05, G:0.11, T:0.05


Consensus pattern (19 bp):   
AAGAAAAATAACAAAAAAA
Done.