Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013183.1 Corchorus olitorius cultivar O-4 contig13216, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5003
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.28


Found at i:4165 original size:18 final size:19

Alignment explanation


    Indices: 4128--4165  Score: 51
    Period size: 21  Copynumber: 1.9  Consensus size: 19

       4118 CATTGGACCT

                                 
       4128 AATGGCATCTTCAATGGATCA
          1 AATGGCATCTT--ATGGATCA

                              
       4149 AATGGCATCTT-TGGATC
          1 AATGGCATCTTATGGATC

       4166 CTTGGTGCTA


Statistics
Matches: 17,  Mismatches: 0, Indels: 3
        0.85            0.00        0.15

Matches are distributed among these distances:
  18    6  0.35
  21   11  0.65

ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32


Consensus pattern (19 bp):   
AATGGCATCTTATGGATCA
Done.