Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013187.1 Corchorus olitorius cultivar O-4 contig13220, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55835

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1053--1109
30
1.9
29
89
10
89
21
14
5
59
1.54
1753--1788
18
2.0
18
88
0
54
47
5
11
36
1.63
1823--1985
80
2.1
79
97
1
308
36
12
22
28
1.91
2697--2750
19
2.6
21
77
19
60
38
5
20
35
1.76
5012--5179
31
5.6
30
70
18
134
33
19
19
26
1.96
5047--5150
29
3.5
29
77
10
120
35
17
19
27
1.94
5016--5181
60
2.8
60
88
7
264
34
19
19
25
1.96
5221--5385
31
5.5
31
68
18
123
27
21
19
32
1.97
5252--5350
29
3.4
28
67
20
76
28
22
18
31
1.97
5220--5381
60
2.7
60
97
0
297
26
20
19
32
1.97
10698--10726
2
14.5
2
100
0
58
48
0
0
51
1.00
12304--12652
159
2.2
160
80
6
393
32
17
17
32
1.94
15349--15385
19
1.9
19
100
0
74
37
13
21
27
1.91
23168--23296
27
4.8
27
91
0
213
17
40
20
21
1.91
24112--24146
17
2.1
17
94
0
61
20
8
17
54
1.68
25669--25900
32
7.2
32
89
1
349
35
23
18
21
1.95
26042--26102
24
2.5
24
100
0
122
22
24
29
22
1.99
29094--29128
2
17.5
2
100
0
70
51
0
0
48
1.00
29755--30466
47
14.1
53
82
11
547
28
19
4
46
1.70
29856--29952
49
2.0
49
91
0
158
24
18
5
51
1.66
30037--30496
47
9.5
47
87
6
577
29
20
3
46
1.68
29773--30496
141
4.8
143
80
12
637
28
19
4
46
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29773--30496
94
7.2
94
78
12
641
28
19
4
46
1.70
38836--38865
15
1.9
16
93
6
53
66
10
10
13
1.44
50124--50163
15
2.6
16
88
4
55
62
10
10
17
1.53
50950--50983
10
3.5
10
96
4
61
26
0
38
35
1.57

Tables:   1

The End!