Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013188.1 Corchorus olitorius cultivar O-4 contig13221, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80408

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5682--5714
17
2.0
17
88
5
50
69
0
9
21
1.15
7410--7824
207
2.0
207
97
0
785
30
27
14
27
1.95
15812--15851
19
2.1
19
100
0
80
52
5
25
17
1.64
16920--17045
45
2.8
45
96
0
234
38
19
5
36
1.76
17709--17799
45
2.1
44
90
8
143
38
21
5
34
1.77
18549--18594
22
2.0
23
84
12
60
58
13
0
28
1.35
20067--20112
2
23.0
2
82
8
58
45
0
6
47
1.28
20064--20112
18
2.7
18
87
9
73
44
0
8
46
1.33
28980--29035
29
1.9
29
92
0
94
10
10
33
44
1.74
39519--39574
21
2.7
21
97
0
103
8
23
35
32
1.86
42352--42501
76
2.0
76
84
2
194
18
25
27
28
1.98
46884--46992
2
56.0
2
69
15
59
49
3
0
45
1.25
46864--46974
26
4.2
25
75
15
91
48
3
0
46
1.25
46887--46993
18
6.0
18
68
20
73
50
3
0
44
1.26
46967--47010
16
2.8
15
81
18
54
50
4
0
45
1.22
46965--47006
18
2.5
17
88
7
59
47
4
0
47
1.23
48879--48926
14
3.6
14
72
11
55
33
10
27
29
1.90
60320--60368
20
2.4
21
76
10
57
34
0
8
57
1.29
67958--68040
42
2.0
42
92
0
139
26
27
16
28
1.97

Tables:   1

The End!