Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013192.1 Corchorus olitorius cultivar O-4 contig13225, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3476
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.34


Found at i:1121 original size:80 final size:79

Alignment explanation


    Indices: 997--1144  Score: 251
    Period size: 80  Copynumber: 1.9  Consensus size: 79

        987 TTAAAATGCT

                                     *             *                         
        997 AAAAATAAAATAATTATAAAATATTGAATTTAATTAAATGAAAATAGAGTTTTTAGTAGAATAAA
          1 AAAAATAAAATAATTATAAAATATTAAATTTAATTAAATAAAAATAGAGTTTTTAGTAGAATAAA

                          
       1062 ACTCTTTATTTTGA
         66 ACTCTTTATTTTGA

                     *                          *                            
       1076 AAAAATAAAGTAATTATAAAGATATTAAATTTAATTGAATAAAAATAGAGTTTTTAGTAGAATAA
          1 AAAAATAAAATAATTATAAA-ATATTAAATTTAATTAAATAAAAATAGAGTTTTTAGTAGAATAA

                
       1141 AACT
         65 AACT

       1145 ATAATAGTTA


Statistics
Matches: 64,  Mismatches: 4, Indels: 1
        0.93            0.06        0.01

Matches are distributed among these distances:
  79   19  0.30
  80   45  0.70

ACGTcount: A:0.53, C:0.02, G:0.09, T:0.36


Consensus pattern (79 bp):   
AAAAATAAAATAATTATAAAATATTAAATTTAATTAAATAAAAATAGAGTTTTTAGTAGAATAAA
ACTCTTTATTTTGA
Done.