Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013195.1 Corchorus olitorius cultivar O-4 contig13228, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10210
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32


Found at i:6490 original size:31 final size:31

Alignment explanation


    Indices: 6453--6527  Score: 150
    Period size: 31  Copynumber: 2.4  Consensus size: 31

       6443 CAATTTGAAT

                                           
       6453 CACTTGGTGGTGAGCTTCGACCGATTCAAAA
          1 CACTTGGTGGTGAGCTTCGACCGATTCAAAA

                                           
       6484 CACTTGGTGGTGAGCTTCGACCGATTCAAAA
          1 CACTTGGTGGTGAGCTTCGACCGATTCAAAA

                         
       6515 CACTTGGTGGTGA
          1 CACTTGGTGGTGA

       6528 TTTCTGTATC


Statistics
Matches: 44,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  31   44  1.00

ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27


Consensus pattern (31 bp):   
CACTTGGTGGTGAGCTTCGACCGATTCAAAA
Done.