Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013197.1 Corchorus olitorius cultivar O-4 contig13230, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48384

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3369--3549
94
1.9
94
85
7
222
37
10
14
37
1.80
6485--6569
33
2.5
33
86
5
100
17
35
34
12
1.88
6564--6612
20
2.3
22
89
6
75
18
38
30
12
1.87
11077--11115
16
2.4
16
91
8
62
12
7
12
66
1.43
11386--11414
15
1.9
15
100
0
58
68
6
3
20
1.27
13769--13809
16
2.7
15
85
7
55
56
2
2
39
1.26
13833--13873
22
2.0
20
90
9
64
58
0
0
41
0.98
14043--14075
17
1.9
17
88
11
50
63
6
0
30
1.18
14661--14748
46
2.0
44
84
8
117
27
6
11
54
1.61
15712--15753
14
2.8
16
82
14
61
40
11
7
40
1.69
15712--15770
15
3.9
15
84
6
66
38
13
6
40
1.71
15744--15778
15
2.4
15
95
4
63
25
17
8
48
1.75
16974--17102
65
2.0
65
100
0
258
27
23
21
27
1.99
17382--17443
26
2.3
26
86
8
81
14
19
22
43
1.87
17395--17446
26
2.0
26
100
0
104
15
15
26
42
1.87
17597--17630
9
3.7
9
92
4
50
20
2
11
64
1.39
18760--18817
29
2.0
30
93
3
100
44
20
0
34
1.52
29063--29332
145
1.9
145
94
1
479
38
18
20
23
1.94
32080--32163
1
84.0
1
71
0
51
84
15
0
0
0.62
32080--32163
6
14.5
6
86
13
115
84
15
0
0
0.62
38576--38613
2
19.5
2
83
5
51
47
0
5
47
1.24
38762--38795
16
2.1
17
94
5
61
29
2
5
61
1.34
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39834--39918
5
16.8
5
90
9
129
62
0
0
37
0.96
43820--43892
27
2.7
26
85
10
103
16
12
16
54
1.70
43819--43910
27
3.3
26
80
10
94
15
15
17
52
1.76
47437--47478
21
2.0
21
95
0
75
33
26
19
21
1.97

Tables:   1

The End!