Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013199.1 Corchorus olitorius cultivar O-4 contig13232, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4158
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.28


Found at i:766 original size:21 final size:21

Alignment explanation


    Indices: 740--781  Score: 75
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        730 GCATCTTAGG

                                 
        740 CAACTCCGATGAGCTTGAAAC
          1 CAACTCCGATGAGCTTGAAAC

                  *              
        761 CAACTCTGATGAGCTTGAAAC
          1 CAACTCCGATGAGCTTGAAAC

        782 TTCTTCCTTA


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.33, C:0.26, G:0.19, T:0.21


Consensus pattern (21 bp):   
CAACTCCGATGAGCTTGAAAC

Found at i:1919 original size:21 final size:21

Alignment explanation


    Indices: 1893--1934  Score: 75
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1883 GCATCTTAGG

                                 
       1893 CAACTCCGATGAGCTTGAAAC
          1 CAACTCCGATGAGCTTGAAAC

                  *              
       1914 CAACTCTGATGAGCTTGAAAC
          1 CAACTCCGATGAGCTTGAAAC

       1935 TTCTTCCTTA


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.33, C:0.26, G:0.19, T:0.21


Consensus pattern (21 bp):   
CAACTCCGATGAGCTTGAAAC
Done.