Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013204.1 Corchorus olitorius cultivar O-4 contig13237, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42552

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1255--1309
21
2.6
21
85
0
65
18
49
20
12
1.79
1662--1691
15
2.1
14
93
6
51
13
16
6
63
1.50
3122--3169
11
4.7
11
80
12
50
39
10
20
29
1.86
3473--3501
13
2.2
13
100
0
58
31
31
13
24
1.94
4541--4582
15
2.7
15
96
3
75
11
7
14
66
1.43
20935--20976
16
2.7
15
88
7
57
11
9
9
69
1.38
26512--26556
19
2.3
19
80
3
54
26
6
17
48
1.72
26797--26893
47
2.1
47
100
0
194
28
8
19
43
1.80
26919--26964
22
2.1
22
100
0
92
17
4
13
65
1.42
34840--34973
41
3.2
42
77
15
134
34
13
16
35
1.88
35497--35524
2
14.0
2
100
0
56
50
0
0
50
1.00
36261--36295
11
3.2
11
91
0
61
0
2
17
80
0.84
37081--37109
10
2.9
10
100
0
58
20
31
27
20
1.98
40330--40365
17
2.1
17
94
0
63
0
36
0
63
0.94

Tables:   1

The End!