genome.fa.s13209.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013209.1 Corchorus olitorius cultivar O-4 contig13242, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83949

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1062--1165	52	2.0	52	98	0	199	29	29	5	34	1.81
7055--7116	19	3.3	19	65	13	56	32	19	6	41	1.77
7045--7139	37	2.6	37	98	0	181	31	22	7	38	1.81
8567--8612	13	3.3	13	82	11	56	17	10	28	43	1.82
9138--10125	439	2.2	437	86	3	1349	27	13	17	42	1.86
11263--11328	21	3.2	20	70	16	62	48	10	9	31	1.69
11263--11343	42	1.9	42	92	0	135	46	13	7	32	1.71
11409--11522	56	2.0	56	100	0	228	39	1	23	35	1.65
12230--12392	87	1.9	88	89	1	256	31	10	3	54	1.50
26728--26775	20	2.4	20	100	0	96	50	8	41	0	1.33
29475--29514	21	1.9	21	85	10	55	32	27	17	22	1.96
37894--37957	21	3.2	20	84	8	76	37	12	20	29	1.89
38008--38044	11	3.6	11	79	20	53	37	10	32	18	1.86
38008--38046	19	2.1	19	100	0	78	38	10	30	20	1.86
38576--38637	30	2.1	30	100	0	124	14	6	16	62	1.50
40186--40211	13	2.0	13	100	0	52	38	0	30	30	1.58
50527--50562	2	18.0	2	100	0	72	50	0	0	50	1.00
50663--50695	7	4.7	7	96	0	57	33	15	9	42	1.78
61363--61400	19	2.0	19	94	0	67	39	18	21	21	1.93
63273--63309	18	2.1	18	100	0	74	35	5	32	27	1.79
69417--69452	2	18.0	2	88	0	54	50	0	0	50	1.00
71603--71648	17	2.8	16	84	12	58	56	2	0	41	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71621--71645	5	5.0	5	100	0	50	60	0	0	40	0.97
71971--72052	28	2.9	28	100	0	164	39	7	21	31	1.81
74725--74778	28	1.9	28	88	7	83	40	14	18	25	1.89
75533--75566	16	2.1	16	88	0	50	0	26	0	73	0.83
76356--76390	11	3.2	11	91	0	61	80	17	2	0	0.84
80700--80732	13	2.5	13	95	0	57	72	0	3	24	0.98
80782--81032	19	13.4	19	74	17	138	66	0	7	25	1.21
80793--80859	27	2.5	27	82	4	82	67	1	5	25	1.22
80828--81013	81	2.4	74	84	11	257	67	0	8	24	1.19
80782--81016	4	61.5	4	67	17	110	67	0	7	25	1.19
80782--81082	11	27.8	11	66	19	127	67	0	7	24	1.20
82681--83033	35	10.0	35	83	8	396	41	20	13	25	1.88
82811--83007	100	2.0	99	90	5	308	42	20	12	24	1.87
82681--83033	135	2.5	139	85	8	457	41	20	13	25	1.88
82998--83106	54	2.0	54	96	0	200	32	23	18	25	1.97

Tables:   1

The End!