Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013211.1 Corchorus olitorius cultivar O-4 contig13244, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70907

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4034--4063
16
1.9
16
93
6
53
36
3
13
46
1.60
10393--10461
36
1.9
36
87
0
102
43
10
21
24
1.83
10515--10584
32
2.2
33
89
2
106
20
25
4
50
1.66
12058--12131
38
1.9
38
97
0
139
27
14
28
29
1.95
17878--18042
32
5.2
32
81
5
183
24
18
23
33
1.97
22841--22902
31
2.0
31
87
9
90
27
25
22
24
2.00
22801--23400
124
4.8
123
88
4
866
28
19
17
35
1.94
22764--23400
248
2.6
248
92
3
1030
28
18
17
35
1.94
40725--40754
2
15.0
2
100
0
60
50
0
0
50
1.00
43526--43650
42
3.0
42
97
0
232
39
20
6
33
1.78
43560--43628
23
3.2
23
60
16
56
37
21
4
36
1.74
52204--52340
41
3.3
41
79
4
177
37
16
12
32
1.86
57297--57329
7
4.9
7
92
3
50
0
39
0
60
0.97
58213--58251
18
2.2
18
85
0
51
35
10
25
28
1.89
69878--69921
20
2.2
20
100
0
88
25
4
29
40
1.75

Tables:   1

The End!