Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013213.1 Corchorus olitorius cultivar O-4 contig13246, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11570
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.32


Found at i:3957 original size:6 final size:6

Alignment explanation


    Indices: 3946--3976  Score: 53
    Period size: 6  Copynumber: 5.2  Consensus size: 6

       3936 ACTCTTTGAG

                                         *      
       3946 AAAATA AAAATA AAAATA AAAATA ATAATA A
          1 AAAATA AAAATA AAAATA AAAATA AAAATA A

       3977 GGTTAGTAAC


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   6   24  1.00

ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19


Consensus pattern (6 bp):   
AAAATA

Done.