Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013215.1 Corchorus olitorius cultivar O-4 contig13248, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12204
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31


Found at i:1863 original size:28 final size:25

Alignment explanation


    Indices: 1824--1878  Score: 74
    Period size: 28  Copynumber: 2.1  Consensus size: 25

       1814 CTGGGAGTCA

                                       
       1824 AACTAACTGACTCAACAAAACTGAACT
          1 AACTAACTGACTCAA-AAAACTG-ACT

                               *      
       1851 AACTGAACTGACTCAAAAACCTGACT
          1 AACT-AACTGACTCAAAAAACTGACT

              
       1877 AA
          1 AA

       1879 ACCCAACAGA


Statistics
Matches: 26,  Mismatches: 1, Indels: 3
        0.87            0.03        0.10

Matches are distributed among these distances:
  26    5  0.19
  27   10  0.38
  28   11  0.42

ACGTcount: A:0.47, C:0.25, G:0.09, T:0.18


Consensus pattern (25 bp):   
AACTAACTGACTCAAAAAACTGACT
Done.