Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013225.1 Corchorus olitorius cultivar O-4 contig13258, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69700

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4139--4196
29
2.0
30
83
10
75
34
15
20
29
1.94
23421--23445
13
1.9
13
100
0
50
64
4
0
32
1.12
24757--24781
6
4.2
6
100
0
50
64
0
16
20
1.30
26996--27083
35
2.6
33
85
7
106
53
22
6
17
1.67
32360--32621
131
2.0
133
90
2
413
38
10
2
48
1.51
33247--33281
16
2.2
16
89
0
52
5
17
40
37
1.73
34134--34206
32
2.3
32
95
0
137
26
16
17
39
1.91
38087--38217
59
2.2
59
94
0
226
24
35
26
13
1.93
38901--38932
14
2.1
16
88
11
50
65
0
12
21
1.25
40053--40077
12
2.1
12
100
0
50
36
24
24
16
1.94
54391--54428
15
2.5
15
100
0
76
23
36
13
26
1.91
55851--55896
22
2.1
21
84
11
58
60
2
13
23
1.43
55774--55941
92
1.8
93
92
1
284
51
0
12
35
1.44
55918--55975
27
2.1
27
80
0
62
44
1
13
39
1.54
56692--56741
5
9.6
5
80
20
50
60
0
18
22
1.37
56696--56741
13
3.8
12
86
13
67
60
0
17
21
1.35
56688--56741
18
2.9
19
82
12
69
59
0
18
22
1.38
57534--57755
109
2.0
109
98
0
426
38
12
8
40
1.74
57875--57955
39
2.0
40
92
2
137
50
8
3
37
1.51
57946--57992
25
1.9
25
87
12
71
29
6
8
55
1.55
58064--58418
194
1.9
189
94
3
629
34
10
8
45
1.70
58975--59043
35
1.9
36
91
2
113
59
8
10
21
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60323--60432
58
1.9
58
86
3
159
33
17
14
34
1.90
62395--62604
33
6.4
33
86
0
231
12
11
49
25
1.75
62395--62607
66
3.2
66
88
0
264
13
11
49
25
1.75
62394--62591
99
2.0
99
87
0
288
12
11
48
27
1.74
69589--69655
26
2.5
27
88
7
93
35
7
17
38
1.78

Tables:   1

The End!