Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013226.1 Corchorus olitorius cultivar O-4 contig13259, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2871

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--134
54
2.5
54
95
3
234
33
23
15
27
1.95
245--551
37
8.3
37
78
4
269
44
15
15
23
1.86
231--474
74
3.3
74
88
1
353
45
14
15
24
1.84
232--453
75
3.0
74
89
2
320
46
14
14
23
1.82
232--513
149
1.9
149
85
2
388
44
15
15
24
1.86
926--980
26
2.1
26
100
0
110
38
23
7
30
1.82
1544--1597
21
2.7
20
83
11
65
0
18
1
79
0.82
1544--1593
9
5.3
9
78
7
55
0
18
2
80
0.82
1964--1990
6
4.5
6
100
0
54
0
18
0
81
0.69
2247--2311
14
4.8
13
85
12
78
40
9
7
43
1.65
2247--2311
28
2.4
27
85
10
87
40
9
7
43
1.65

Tables:   1

The End!