Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013230.1 Corchorus olitorius cultivar O-4 contig13263, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 18050
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33


Found at i:5458 original size:11 final size:11

Alignment explanation


    Indices: 5424--5471  Score: 52
    Period size: 11  Copynumber: 4.7  Consensus size: 11

       5414 TTGAATTAAT

                       
       5424 TCTTC-AATAG
          1 TCTTCAAATAG

                       
       5434 TCTTC--A-AG
          1 TCTTCAAATAG

                        
       5442 TCTTCAAATTA-
          1 TCTTCAAA-TAG

                       
       5453 TCTTCAAATAG
          1 TCTTCAAATAG

                    
       5464 TCTTCAAA
          1 TCTTCAAA

       5472 CACGAACTTC


Statistics
Matches: 33,  Mismatches: 0, Indels: 9
        0.79            0.00        0.21

Matches are distributed among these distances:
   8    7  0.21
   9    1  0.03
  10    8  0.24
  11   16  0.48
  12    1  0.03

ACGTcount: A:0.33, C:0.21, G:0.06, T:0.40


Consensus pattern (11 bp):   
TCTTCAAATAG

Found at i:13394 original size:2 final size:2

Alignment explanation


    Indices: 13387--13420  Score: 68
    Period size: 2  Copynumber: 17.0  Consensus size: 2

      13377 CCGTGAGTAC

                                                              
      13387 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

      13421 CTCATTTAAA


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   32  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Done.