Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013233.1 Corchorus olitorius cultivar O-4 contig13266, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57955

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24999--25030
14
2.1
16
88
11
50
37
0
3
59
1.13
26485--26567
22
3.8
21
73
17
64
57
1
2
38
1.19
26487--26535
25
2.0
25
84
8
64
59
0
0
40
0.98
28361--28398
10
3.8
10
96
0
67
39
36
0
23
1.55
29642--29668
4
6.8
4
100
0
54
74
0
0
25
0.83
29666--29693
2
14.0
2
100
0
56
50
0
0
50
1.00
34246--34271
5
5.2
5
100
0
52
42
0
57
0
0.98
34792--34817
11
2.4
11
100
0
52
23
23
26
26
2.00
35385--35751
40
9.3
39
80
9
203
37
18
27
16
1.92
35528--35793
40
6.8
39
84
4
306
34
19
28
18
1.95
35568--35781
115
1.9
115
90
2
340
34
20
26
18
1.96
35761--35895
47
2.8
47
80
7
121
36
17
26
20
1.94
37256--37322
21
3.2
21
68
16
66
46
17
2
32
1.64
37237--37324
42
2.1
42
100
0
176
46
18
2
32
1.61
46377--46542
41
4.0
41
85
6
212
27
12
22
37
1.90
46377--46542
21
8.1
20
84
7
192
27
12
22
37
1.90
46377--46542
62
2.7
61
88
1
242
27
12
22
37
1.90
48777--48802
13
2.0
13
100
0
52
53
30
0
15
1.42
52342--52370
6
4.8
6
100
0
58
31
34
0
34
1.58
55824--55889
21
3.2
20
76
8
60
30
10
19
39
1.86

Tables:   1

The End!