Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013234.1 Corchorus olitorius cultivar O-4 contig13267, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27833

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
989--1030
11
3.9
11
84
3
59
0
4
16
78
0.91
978--1037
28
2.1
29
84
9
79
1
8
15
75
1.12
2596--2697
51
2.0
50
81
9
118
22
24
13
39
1.90
4003--4033
15
2.1
15
93
0
53
51
0
0
48
1.00
7923--8277
179
2.0
179
98
0
683
31
25
20
21
1.98
19305--19330
13
2.0
13
100
0
52
15
0
30
53
1.42
21817--21841
1
25.0
1
100
0
50
100
0
0
0
0.00
25675--25777
22
4.7
22
75
9
86
42
11
9
35
1.74
25675--25786
43
2.6
43
84
2
134
41
13
8
35
1.76
25678--25802
44
2.9
43
81
2
106
42
13
8
35
1.76
27055--27088
14
2.3
15
90
5
52
58
23
5
11
1.55
27176--27204
2
14.5
2
100
0
58
51
0
0
48
1.00

Tables:   1

The End!