Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013235.1 Corchorus olitorius cultivar O-4 contig13268, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8064

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--171
68
2.5
68
96
0
315
23
21
29
25
1.99
741--847
50
2.1
50
89
0
160
38
14
14
32
1.86
1101--1129
14
2.1
14
93
6
51
13
13
0
72
1.13
1096--1154
22
2.7
23
84
7
86
13
15
0
71
1.15
1498--1550
27
2.0
27
85
14
74
7
0
11
81
0.88
1497--1556
18
3.3
19
84
11
72
6
0
11
81
0.86
1498--1550
9
5.9
9
85
10
65
7
0
11
81
0.88
2384--2535
75
2.0
75
93
0
259
31
23
8
36
1.85
7395--7526
33
3.8
33
83
6
138
37
16
14
31
1.89
7543--7578
19
1.9
19
88
5
56
27
0
13
58
1.36

Tables:   1

The End!