Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013236.1 Corchorus olitorius cultivar O-4 contig13269, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10471

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--353
54
6.6
54
82
2
311
31
23
18
26
1.98
47--350
162
1.9
162
81
2
378
31
23
19
26
1.98
1--350
108
3.2
108
81
4
395
31
24
18
26
1.98
319--599
35
7.9
35
88
5
368
40
18
13
26
1.88
1707--1787
39
2.1
39
83
4
101
37
13
13
35
1.84
1966--2011
21
2.2
22
88
7
69
10
17
2
69
1.27
2368--2415
14
3.5
13
81
15
53
31
16
10
41
1.82
4935--5160
8
29.2
8
68
14
91
65
0
8
25
1.27
4935--5162
27
8.8
26
65
23
65
64
0
8
25
1.27
5010--5163
46
3.3
46
86
3
168
62
1
8
27
1.31
5054--5170
46
2.5
46
92
0
189
60
2
7
29
1.38
7918--7973
18
3.3
18
69
23
57
55
14
0
30
1.40
7925--7977
16
3.3
15
80
14
61
49
18
0
32
1.48
8321--8347
13
2.1
13
100
0
54
40
0
14
44
1.46

Tables:   1

The End!