Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013240.1 Corchorus olitorius cultivar O-4 contig13273, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5903
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34


Found at i:3515 original size:28 final size:26

Alignment explanation


    Indices: 3472--3523  Score: 68
    Period size: 28  Copynumber: 1.9  Consensus size: 26

       3462 TGTCCCTCTG

                                        
       3472 AAAAAAAAAAGAGAGTGTTAGTAACCTC
          1 AAAAAAAAAAGAGA--GTTAGTAACCTC

                *      *            
       3500 AAAAGAAAAAGGGAGTTAGTAACC
          1 AAAAAAAAAAGAGAGTTAGTAACC

       3524 CCTAAATCAT


Statistics
Matches: 22,  Mismatches: 2, Indels: 2
        0.85            0.08        0.08

Matches are distributed among these distances:
  26   10  0.45
  28   12  0.55

ACGTcount: A:0.54, C:0.10, G:0.21, T:0.15


Consensus pattern (26 bp):   
AAAAAAAAAAGAGAGTTAGTAACCTC
Done.