Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013244.1 Corchorus olitorius cultivar O-4 contig13277, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59731

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6624--6653
1
30.0
1
100
0
60
0
0
0
100
0.00
9591--9658
6
11.3
6
98
0
127
33
14
50
1
1.53
13905--13935
1
31.0
1
100
0
62
0
0
0
100
0.00
16020--16063
20
2.3
20
88
7
65
68
0
11
20
1.20
17243--17275
14
2.4
14
94
0
57
69
0
3
27
1.03
17374--17420
23
2.0
23
95
0
85
46
27
8
17
1.76
21132--21165
11
2.8
12
91
8
52
91
2
5
0
0.51
23584--23730
73
2.0
73
95
0
267
41
19
11
27
1.86
24672--24703
1
32.0
1
100
0
64
0
0
0
100
0.00
33163--33193
1
31.0
1
100
0
62
100
0
0
0
0.00
33258--33283
3
8.7
3
100
0
52
65
0
0
34
0.93
33352--33414
27
2.4
25
77
12
65
46
9
3
41
1.52
37160--37223
21
3.0
21
90
0
74
26
32
20
20
1.97
37254--37315
21
3.0
21
95
0
115
24
38
17
19
1.93
37174--37386
92
2.3
91
93
1
354
29
28
22
20
1.98
37344--37386
22
2.0
22
85
0
59
25
32
20
20
1.97
41401--41440
19
2.2
19
90
4
64
30
22
2
45
1.66
43057--43081
11
2.3
11
100
0
50
24
28
12
36
1.91
43141--43178
18
2.1
19
90
5
60
18
39
13
28
1.88
44048--44074
14
1.9
14
100
0
54
14
7
3
74
1.18
47693--47717
6
4.2
6
100
0
50
84
0
16
0
0.63
50115--50168
19
2.6
21
77
19
60
38
18
3
38
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53331--53371
6
7.0
6
91
5
66
82
0
14
2
0.76
53334--53371
11
3.4
11
92
3
58
84
0
13
2
0.73
53331--53371
17
2.4
17
91
4
64
82
0
14
2
0.76
54905--54940
19
1.9
18
88
5
54
33
22
2
41
1.68
57955--57997
16
2.6
17
82
17
56
11
11
6
69
1.35

Tables:   1

The End!