Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013249.1 Corchorus olitorius cultivar O-4 contig13282, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53519

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
225--324
27
3.7
27
94
0
173
21
17
42
20
1.90
3211--3414
102
2.0
102
97
0
381
31
23
17
26
1.97
4980--5026
26
1.9
24
87
12
69
40
4
27
27
1.75
5701--5830
65
2.0
65
95
0
233
20
30
26
22
1.98
6020--6061
21
2.0
21
95
0
75
35
28
16
19
1.93
7946--7977
15
2.1
15
94
0
55
68
6
9
15
1.36
10078--10145
31
2.1
31
81
10
75
41
20
1
36
1.62
15698--15728
16
1.9
16
93
0
53
54
19
9
16
1.68
17617--17684
29
2.2
29
80
12
75
45
4
13
36
1.63
26491--26520
13
2.4
13
94
5
53
23
6
16
53
1.66
28006--28982
30
32.2
30
87
2
1279
46
16
14
21
1.83
28947--29030
39
2.2
39
86
0
114
51
10
15
22
1.74
29056--29096
20
2.0
20
85
0
55
31
24
19
24
1.98
29071--29577
170
3.0
170
84
4
680
35
16
18
28
1.93
29424--29726
149
2.0
149
98
0
579
35
17
20
27
1.94
29251--29887
318
2.0
319
90
2
994
35
17
18
28
1.94
29570--30013
169
2.6
169
91
2
709
34
18
20
27
1.95
31710--31747
19
2.0
19
90
10
60
0
21
0
78
0.74
31726--31755
8
3.8
8
95
0
51
3
16
0
80
0.85
32050--32088
20
2.0
20
85
10
53
15
0
10
74
1.07
32053--32130
24
3.0
25
72
12
68
16
0
8
74
1.06
32064--32130
19
3.9
17
68
22
50
16
0
7
76
1.01
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32512--32579
16
4.2
16
78
12
77
11
13
0
75
1.06
32526--32579
17
3.2
17
76
5
56
11
12
0
75
1.04
32512--32571
8
7.5
8
78
14
70
11
15
0
73
1.10
35825--35858
14
2.3
15
90
5
52
67
29
2
0
1.05
36612--36657
12
3.7
12
80
11
56
6
13
0
80
0.89
36620--36655
14
2.4
16
82
17
51
2
11
0
86
0.68
36612--36649
20
1.9
20
84
10
51
5
10
0
84
0.77
38275--38330
17
3.2
17
75
9
67
28
3
50
17
1.63
38913--38952
15
2.6
16
88
4
55
62
12
10
15
1.54
48826--48861
19
1.9
18
88
5
54
41
2
22
33
1.68
49445--49469
13
1.9
13
100
0
50
8
24
0
68
1.16
51086--51140
21
2.6
21
77
5
58
23
3
7
65
1.34

Tables:   1

The End!