Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013252.1 Corchorus olitorius cultivar O-4 contig13285, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31684

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1096--1131
19
1.9
18
88
5
54
27
22
8
41
1.82
4096--4273
91
1.9
93
82
8
222
36
7
14
42
1.73
4777--4818
5
8.8
5
79
10
52
0
2
23
73
0.94
4777--4816
9
4.3
9
85
14
55
0
2
22
75
0.93
4782--4818
14
2.6
15
87
8
51
0
2
24
72
0.97
9912--9972
22
2.8
22
92
0
95
3
27
45
22
1.68
15574--15609
19
1.9
18
88
5
54
27
22
8
41
1.82
18219--18287
34
2.0
35
97
2
131
60
8
18
11
1.56
18686--18743
16
3.2
20
76
18
56
25
6
3
63
1.35
19211--19603
58
6.7
58
85
3
488
23
15
19
41
1.89
19211--19693
58
8.2
58
82
4
450
24
14
19
41
1.89
19210--19603
117
3.4
116
84
4
549
23
15
19
41
1.89
24547--24571
1
25.0
1
100
0
50
0
0
0
100
0.00
24597--24631
18
2.0
18
88
5
54
37
11
5
45
1.64
27568--27704
67
2.0
68
97
1
258
36
24
14
24
1.93
27827--27879
22
2.4
23
78
9
65
66
5
7
20
1.38
30245--30321
40
1.9
40
82
10
95
48
14
12
24
1.79

Tables:   1

The End!