Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013254.1 Corchorus olitorius cultivar O-4 contig13287, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7656
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30


Found at i:1706 original size:19 final size:18

Alignment explanation


    Indices: 1673--1709  Score: 56
    Period size: 19  Copynumber: 2.0  Consensus size: 18

       1663 TGGAAATAAT

                              
       1673 TCTTCAATGGTCTTCAAA
          1 TCTTCAATGGTCTTCAAA

                     *         
       1691 TCTTCAAATTGTCTTCAAA
          1 TCTTC-AATGGTCTTCAAA

       1710 CACGAACCTC


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  18    5  0.29
  19   12  0.71

ACGTcount: A:0.30, C:0.22, G:0.08, T:0.41


Consensus pattern (18 bp):   
TCTTCAATGGTCTTCAAA
Done.