Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013255.1 Corchorus olitorius cultivar O-4 contig13288, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15527
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:14796 original size:32 final size:32

Alignment explanation


    Indices: 14759--14862  Score: 129
    Period size: 32  Copynumber: 3.3  Consensus size: 32

      14749 ACTGACGTGG

                                           *
      14759 CAATGCCACATTGGACCAAAAATGCCATGTGG
          1 CAATGCCACATTGGACCAAAAATGCCATGTGA

                    ** *    *       *       
      14791 CAATGCCATGTCGGACAAAAAATGTCATGTGA
          1 CAATGCCACATTGGACCAAAAATGCCATGTGA

                                       *    
      14823 CAATGCCACATTGGA-CAAAAATGCCACGTGA
          1 CAATGCCACATTGGACCAAAAATGCCATGTGA

               *     
      14854 CAAGGCCAC
          1 CAATGCCAC

      14863 GTCAGAGCAA


Statistics
Matches: 59,  Mismatches: 13, Indels: 1
        0.81            0.18        0.01

Matches are distributed among these distances:
  31   21  0.36
  32   38  0.64

ACGTcount: A:0.37, C:0.25, G:0.21, T:0.17


Consensus pattern (32 bp):   
CAATGCCACATTGGACCAAAAATGCCATGTGA

Done.