genome.fa.s13256.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013256.1 Corchorus olitorius cultivar O-4 contig13289, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40375

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5788--5921	2	74.5	2	75	20	82	46	0	2	50	1.22
5788--5822	15	2.3	15	95	0	61	48	2	0	48	1.16
5788--5921	13	10.5	13	73	14	93	46	0	2	50	1.22
5798--5898	23	4.3	24	69	16	61	44	0	2	52	1.16
5798--5875	41	1.9	41	86	0	111	46	0	2	51	1.14
5778--5921	77	1.9	77	81	11	181	48	0	2	47	1.21
6857--7049	51	3.8	51	85	5	257	45	9	7	37	1.65
6942--7024	27	3.2	26	70	16	73	45	14	4	34	1.66
9509--9625	48	2.4	48	92	0	189	13	16	23	47	1.82
9777--9981	57	3.6	57	86	3	261	12	23	22	40	1.89
9937--10020	39	2.2	39	88	0	123	7	26	23	42	1.80
9953--10020	21	3.4	20	70	13	59	8	23	25	42	1.82
10031--10115	39	2.2	39	87	4	127	5	18	25	49	1.70
9777--10159	153	2.5	151	73	9	371	12	22	22	42	1.87
9878--10161	96	3.0	96	87	1	390	10	22	23	42	1.84
11023--11091	34	2.2	32	84	10	88	13	8	11	66	1.44
15029--15064	15	2.5	15	90	4	56	61	13	0	25	1.33
15110--15195	37	2.3	37	88	4	129	32	15	13	38	1.87
15142--15286	28	5.5	28	62	12	90	32	18	13	35	1.89
15147--15346	52	3.8	52	93	0	337	32	17	13	37	1.88
15305--15521	37	5.7	37	77	14	183	27	16	19	36	1.93
15346--15429	43	2.0	43	97	0	159	28	15	19	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16425--16456	12	2.6	13	85	14	50	50	18	0	31	1.48
16854--17376	224	2.3	224	93	1	868	35	19	10	33	1.86
18592--18630	18	2.2	18	95	0	69	12	30	2	53	1.52
19153--19255	29	3.4	29	67	15	82	44	11	12	31	1.78
19108--19292	61	3.0	61	92	1	307	43	12	14	29	1.82
19304--19390	39	2.2	39	91	0	138	36	8	21	33	1.83
20968--21011	17	2.6	17	88	0	61	59	22	0	18	1.38
29177--29220	15	2.9	15	79	0	61	9	6	36	47	1.62
32418--32483	15	4.4	15	86	0	78	33	33	12	21	1.90
32653--32698	18	2.6	18	89	0	65	17	43	6	32	1.75
33428--33463	15	2.5	15	90	4	56	69	16	0	13	1.19
34204--34319	47	2.6	42	81	13	142	42	13	14	29	1.84
34219--34321	47	2.2	47	91	3	163	41	13	12	32	1.82
39390--39419	14	2.1	14	93	0	51	33	13	13	40	1.83

Tables:   1

The End!