Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013257.1 Corchorus olitorius cultivar O-4 contig13290, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 24227
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.32


Found at i:1110 original size:14 final size:14

Alignment explanation


    Indices: 1091--1120  Score: 51
    Period size: 14  Copynumber: 2.1  Consensus size: 14

       1081 GATGTTTTCC

                  *       
       1091 ATATATTGCTAGCT
          1 ATATATAGCTAGCT

                          
       1105 ATATATAGCTAGCT
          1 ATATATAGCTAGCT

              
       1119 AT
          1 AT

       1121 CAACTCAAAT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  14   15  1.00

ACGTcount: A:0.33, C:0.13, G:0.13, T:0.40


Consensus pattern (14 bp):   
ATATATAGCTAGCT

Found at i:4672 original size:25 final size:24

Alignment explanation


    Indices: 4624--4678  Score: 67
    Period size: 25  Copynumber: 2.3  Consensus size: 24

       4614 CAACAGTCCC

                 *             **   
       4624 TTTTACTT-TTCTTTTCCTTTTTT
          1 TTTTATTTATTCTTTTCCTCCTTT

                                     
       4647 TATTTATTTATTCTTTTCCTCCTTT
          1 T-TTTATTTATTCTTTTCCTCCTTT

                   
       4672 TTTTATT
          1 TTTTATT

       4679 ATAAAAAATA


Statistics
Matches: 27,  Mismatches: 3, Indels: 3
        0.82            0.09        0.09

Matches are distributed among these distances:
  23    1  0.04
  24   12  0.44
  25   14  0.52

ACGTcount: A:0.09, C:0.16, G:0.00, T:0.75


Consensus pattern (24 bp):   
TTTTATTTATTCTTTTCCTCCTTT
Done.