Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013261.1 Corchorus olitorius cultivar O-4 contig13294, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40296

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1617--1663
6
8.3
6
88
9
64
0
2
14
82
0.75
1617--1663
16
2.8
18
84
12
64
0
2
14
82
0.75
4026--4127
51
2.0
51
100
0
204
13
33
19
33
1.91
6381--6566
97
1.9
97
89
5
291
30
21
17
30
1.96
8507--8534
2
14.0
2
100
0
56
50
0
0
50
1.00
13552--13593
20
2.1
20
95
0
75
16
0
38
45
1.48
14009--14072
24
2.7
24
100
0
128
32
17
0
50
1.46
14366--14397
13
2.4
14
90
10
50
31
0
6
62
1.20
15817--15886
22
3.3
21
71
15
56
27
1
5
65
1.23
15816--15972
3
52.3
3
69
11
72
29
1
7
61
1.32
15880--15926
19
2.5
19
82
0
58
31
2
10
55
1.46
19099--19173
30
2.5
30
93
0
132
37
9
6
46
1.62
20519--20560
12
3.6
12
80
6
50
61
9
11
16
1.55
27145--27173
15
1.9
15
100
0
58
13
6
6
72
1.26
36829--36860
6
5.3
6
92
0
55
84
3
12
0
0.74

Tables:   1

The End!