Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013263.1 Corchorus olitorius cultivar O-4 contig13296, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25906

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
798--837
15
2.6
16
88
4
55
15
10
12
62
1.54
6389--6430
16
2.5
17
76
7
59
4
4
4
85
0.82
6386--6444
28
2.1
29
81
9
68
8
5
6
79
1.04
6389--6454
33
2.0
32
82
11
80
9
4
7
78
1.07
11209--11280
27
2.7
27
86
4
92
40
26
15
18
1.90
18550--18600
22
2.3
22
83
12
61
37
17
31
13
1.89
20703--20736
15
2.2
16
94
5
61
32
5
0
61
1.20
20778--20843
21
3.0
21
77
12
71
50
0
1
48
1.10
20782--20842
24
2.6
24
79
7
63
49
0
1
49
1.10
20874--20927
22
2.3
24
81
12
69
51
0
3
44
1.19
20907--20939
16
2.1
16
94
0
57
54
3
6
36
1.41
21034--21069
18
2.0
18
100
0
72
50
0
16
33
1.46

Tables:   1

The End!