genome.fa.s13266.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013266.1 Corchorus olitorius cultivar O-4 contig13299, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54072

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
264--308	21	2.1	21	88	8	65	28	26	22	22	1.99
5992--6024	3	11.0	3	100	0	66	33	0	0	66	0.92
11095--11129	2	17.5	2	100	0	70	51	0	0	48	1.00
12388--12418	2	15.5	2	100	0	62	48	0	0	51	1.00
22460--22853	196	2.0	198	96	1	729	31	7	33	27	1.85
32808--32848	22	1.9	22	90	5	66	12	2	4	80	0.97
32813--32862	14	3.2	16	72	16	59	10	4	6	80	1.02
33814--34660	424	2.0	423	88	3	1247	28	14	22	34	1.93
35964--36056	24	4.1	21	74	13	78	12	32	21	33	1.91
36232--36310	25	3.2	25	75	13	74	10	29	26	34	1.89
36398--36448	25	2.0	25	92	0	84	5	37	31	25	1.80
36645--36792	25	6.0	25	66	10	61	12	30	27	30	1.92
36648--36809	74	2.2	74	83	2	191	13	28	27	30	1.94
36971--37018	25	1.9	25	86	0	69	12	35	27	25	1.92
36779--37016	111	2.2	111	86	3	338	14	28	25	31	1.95
36901--37149	134	1.9	135	88	4	378	15	30	22	31	1.95
37113--37172	24	2.5	24	80	2	66	13	33	25	28	1.93
37036--37258	111	2.0	111	82	1	270	13	28	23	34	1.93
37219--37458	25	9.7	25	74	7	148	13	30	26	30	1.94
37250--37482	74	3.1	74	89	0	349	14	29	25	30	1.94
37579--38013	122	3.6	120	76	12	396	12	28	29	30	1.93
37737--37958	113	2.0	112	87	6	324	9	28	31	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47621--47650	12	2.5	12	100	0	60	53	0	0	46	1.00
48885--48941	28	2.0	28	93	6	98	36	15	15	31	1.90
48939--48992	28	1.9	28	85	7	74	29	14	18	37	1.91
49065--49258	41	4.7	41	82	6	223	32	12	18	36	1.89
50003--50252	130	1.9	131	92	1	421	49	3	10	36	1.54
52225--52264	17	2.4	17	91	0	62	27	7	5	60	1.45
52439--52496	29	2.0	30	93	3	100	17	10	48	24	1.78
52776--52817	20	2.1	20	95	0	75	52	0	4	42	1.22

Tables:   1

The End!