Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013268.1 Corchorus olitorius cultivar O-4 contig13301, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58055

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
923--1037
58
2.0
58
91
3
187
32
15
20
31
1.94
1619--1706
26
3.2
30
63
29
77
23
21
25
29
1.99
1619--1723
52
2.0
52
98
0
201
22
20
26
29
1.99
2357--2426
36
1.9
36
88
5
106
21
11
7
60
1.55
3117--3530
206
2.0
203
92
2
695
43
8
10
37
1.70
3604--3650
25
1.9
24
95
4
85
55
8
6
29
1.55
3641--3699
17
2.9
21
69
23
54
35
5
10
49
1.59
3641--3721
39
2.0
40
90
2
128
35
4
8
50
1.55
5892--6030
69
2.0
69
88
5
210
23
11
15
48
1.78
6513--6537
2
12.5
2
100
0
50
52
0
0
48
1.00
6712--6788
29
2.6
30
79
6
93
32
23
12
31
1.92
7084--7156
29
2.4
30
84
6
94
32
13
26
27
1.94
12200--12261
16
3.9
16
81
6
63
4
40
1
53
1.32
20820--21029
105
2.0
105
98
0
402
22
24
17
36
1.95
31364--31484
31
3.9
31
86
3
145
19
20
23
35
1.96
38986--39032
23
2.0
23
87
0
67
44
14
6
34
1.71
46084--46157
16
4.6
16
80
6
78
40
39
10
9
1.73
46114--46148
17
2.1
16
89
5
52
45
34
11
8
1.71
47727--47783
15
3.6
15
75
17
53
40
36
15
7
1.75
52954--53026
38
1.9
38
91
0
119
27
16
5
50
1.67
53032--53169
71
2.0
69
89
2
213
23
23
19
33
1.97

Tables:   1

The End!