Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001327.1 Corchorus olitorius cultivar O-4 contig01327, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 847

Length: 1413
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.34


Found at i:249 original size:22 final size:22

Alignment explanation


    Indices: 205--249  Score: 54
    Period size: 22  Copynumber: 2.0  Consensus size: 22

        195 ATAATAACTC

                              *   
        205 TTTTAGTAATCTTAAAAGTTTT
          1 TTTTAGTAATCTTAAAAGGTTT

                 *    *   *       
        227 TTTTATTAATTTTATAAGGTTT
          1 TTTTAGTAATCTTAAAAGGTTT

             
        249 T
          1 T

        250 AGAAAGCATA


Statistics
Matches: 19,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  22   19  1.00

ACGTcount: A:0.29, C:0.02, G:0.09, T:0.60


Consensus pattern (22 bp):   
TTTTAGTAATCTTAAAAGGTTT
Done.