Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013270.1 Corchorus olitorius cultivar O-4 contig13303, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15732

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
838--970
59
2.2
60
93
1
223
46
4
13
35
1.64
1201--1251
23
2.0
25
82
14
61
41
1
5
50
1.37
2705--2739
2
17.5
2
87
0
52
54
0
2
42
1.15
2818--2868
23
2.0
25
82
14
61
41
1
5
50
1.37
4215--4250
12
2.9
12
88
8
54
55
0
8
36
1.30
4215--4247
13
2.6
13
90
4
50
57
0
9
33
1.30
4383--4409
2
13.5
2
100
0
54
51
0
0
48
1.00
8857--8894
19
2.0
19
94
0
67
55
13
5
26
1.59
9903--9945
20
2.1
21
91
4
70
51
20
2
25
1.60
11683--11810
54
2.3
55
79
9
154
5
30
39
24
1.78
11792--11828
11
3.4
11
84
0
56
8
35
35
21
1.83
12759--12803
21
2.1
21
87
0
63
31
31
22
15
1.95
14520--14877
180
2.0
178
98
1
698
27
22
16
33
1.95

Tables:   1

The End!