Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013272.1 Corchorus olitorius cultivar O-4 contig13305, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5724

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
787--821
9
3.7
10
88
11
56
34
37
0
28
1.58
1606--1639
16
2.2
16
89
5
52
17
5
14
61
1.52
3896--3963
26
2.6
26
85
0
100
19
14
7
58
1.59
3946--4012
21
3.2
21
73
0
62
17
20
10
50
1.75
3978--4114
36
3.8
35
74
11
107
19
22
5
51
1.68
4011--4134
7
17.4
7
70
18
51
17
24
4
54
1.60
4047--4134
22
3.7
22
78
15
61
18
22
3
55
1.57
4054--4123
21
3.6
21
74
21
71
20
22
2
54
1.58
3978--4134
72
2.2
72
81
5
185
18
23
5
52
1.65
3997--4134
36
3.9
35
81
6
152
18
23
3
53
1.60
4236--4388
32
4.7
32
84
4
173
26
18
6
48
1.72
4236--4388
65
2.4
65
83
1
200
26
18
6
48
1.72

Tables:   1

The End!