Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013277.1 Corchorus olitorius cultivar O-4 contig13310, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42565

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4391--4450
30
2.0
30
90
0
93
50
13
11
25
1.75
4467--4607
29
4.8
29
81
5
158
40
24
14
19
1.90
5565--5730
2
83.0
2
85
11
225
1
1
45
49
1.23
10146--10233
29
3.0
29
73
3
88
45
31
10
12
1.75
10605--10685
6
12.3
7
70
17
50
69
0
3
27
1.05
10669--10839
8
21.6
8
69
16
81
63
1
13
21
1.38
10682--10747
24
2.8
23
90
6
105
57
1
19
21
1.49
10727--10827
38
2.5
41
79
9
100
66
1
11
19
1.33
10778--10842
23
2.9
23
82
13
82
61
4
9
24
1.45
12158--12894
54
13.7
54
83
3
754
31
21
18
28
1.97
12161--13171
108
9.4
105
81
5
717
33
21
17
27
1.96
12862--13207
54
6.5
54
83
4
389
36
21
16
25
1.94
12862--13207
108
3.2
108
85
3
441
36
21
16
25
1.94
14321--14399
39
2.0
39
90
4
124
40
10
15
34
1.81
14575--14641
26
2.5
27
79
13
77
10
20
1
67
1.29
14976--15030
14
4.0
13
80
17
58
36
10
10
41
1.75
15226--15259
17
2.0
17
100
0
68
23
11
11
52
1.70
17591--17636
20
2.2
20
84
3
65
73
0
4
21
1.00
17591--17635
21
2.1
22
88
8
67
75
0
4
20
0.97
17647--17687
3
13.7
3
100
0
82
68
0
0
31
0.90
17683--17721
4
10.0
4
83
5
53
74
2
2
20
1.06
17680--17862
8
23.6
8
71
14
91
62
2
12
22
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17708--17773
24
2.8
24
95
2
116
56
1
19
22
1.51
17790--17851
15
4.1
14
72
13
52
66
3
6
24
1.30
17801--17873
23
3.2
23
76
18
73
61
4
8
26
1.42
20584--20614
1
31.0
1
93
0
53
96
3
0
0
0.21
21214--21263
6
8.3
6
91
8
68
68
0
32
0
0.90
25535--25590
3
19.7
3
80
14
57
73
25
1
0
0.93
25527--25592
15
4.6
14
76
14
64
77
21
1
0
0.85
28488--28549
27
2.3
27
85
0
88
35
17
22
24
1.95
28476--28617
68
2.1
68
93
0
239
37
15
21
25
1.93
28556--28768
27
7.9
27
91
1
338
33
16
25
23
1.96
28556--28792
81
2.9
81
85
3
273
34
16
24
24
1.95
39214--39280
31
2.2
31
91
5
109
37
8
14
38
1.78
40075--40116
2
21.5
2
95
4
77
47
0
0
52
1.00

Tables:   1

The End!