Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013278.1 Corchorus olitorius cultivar O-4 contig13311, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4345
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.35


Found at i:7 original size:2 final size:2

Alignment explanation


    Indices: 1--115  Score: 196
    Period size: 2  Copynumber: 58.0  Consensus size: 2

                                                                          
          1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
          1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT

                                                                          
         43 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C-
          1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT

             *              *              *               
         84 CC CT CT CT CT CC CT CT CT CT CC CT CT CT CT CT
          1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT

        116 TAATGAAAAA


Statistics
Matches: 107,  Mismatches: 5, Indels: 2
        0.94            0.04        0.02

Matches are distributed among these distances:
   1    1  0.01
   2  106  0.99

ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47


Consensus pattern (2 bp):   
CT

Done.