Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013279.1 Corchorus olitorius cultivar O-4 contig13312, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 986

Length: 1644
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33


Found at i:230 original size:95 final size:95

Alignment explanation


    Indices: 67--256  Score: 344
    Period size: 95  Copynumber: 2.0  Consensus size: 95

         57 CCAAAGGCCC

                                                                          *  
         67 CTTTTGAGAATCGATAAGGAGACTCCATTTGAACTTTTTTTGTCCTTTTCTGTCTTTTCTCATTT
          1 CTTTTGAGAATCGATAAGGAGACTCCATTTGAACTTTTTTTGTCCTTTTCTGTCTTTTCTCACTT

                                   *      
        132 GCCAAATTACTAAGAAGACCCTATGTTAGT
         66 GCCAAATTACTAAGAAGACCCTAGGTTAGT

                           *     *                                           
        162 CTTTTGAGAATCGATGAGGAGGCTCCATTTGAACTTTTTTTGTCCTTTTCTGTCTTTTCTCACTT
          1 CTTTTGAGAATCGATAAGGAGACTCCATTTGAACTTTTTTTGTCCTTTTCTGTCTTTTCTCACTT

                                          
        227 GCCAAATTACTAAGAAGACCCTAGGTTAGT
         66 GCCAAATTACTAAGAAGACCCTAGGTTAGT

        257 TTCTAGCCAG


Statistics
Matches: 91,  Mismatches: 4, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  95   91  1.00

ACGTcount: A:0.23, C:0.19, G:0.16, T:0.41


Consensus pattern (95 bp):   
CTTTTGAGAATCGATAAGGAGACTCCATTTGAACTTTTTTTGTCCTTTTCTGTCTTTTCTCACTT
GCCAAATTACTAAGAAGACCCTAGGTTAGT
Done.