Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013281.1 Corchorus olitorius cultivar O-4 contig13314, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40279

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1793--1841
21
2.3
21
82
6
55
14
28
16
40
1.87
7589--7669
42
1.9
41
85
5
108
28
14
4
51
1.63
9111--9140
11
2.7
11
89
0
51
46
6
40
6
1.56
9517--9557
21
2.0
21
90
0
64
34
24
21
19
1.97
16239--16271
17
1.9
17
93
0
57
39
21
21
18
1.93
18568--18757
50
3.8
50
92
0
308
23
29
10
36
1.88
18570--18757
101
1.9
100
93
1
322
23
29
10
36
1.88
19005--19245
64
3.7
64
84
1
302
26
22
14
36
1.93
18969--19266
64
4.6
63
80
6
294
26
22
14
36
1.93
21207--21231
12
2.1
12
100
0
50
24
0
16
60
1.36
28868--28911
8
5.2
8
78
10
52
27
4
13
54
1.58
28877--28909
9
3.8
9
84
8
50
30
6
12
51
1.63
28869--28911
17
2.5
17
100
0
86
27
4
13
53
1.60
34017--34481
69
6.9
69
89
5
646
27
15
29
27
1.96
34331--34446
58
2.0
58
98
0
223
23
14
32
29
1.94
35298--35490
50
3.9
50
90
3
282
33
15
16
34
1.91
35298--35484
99
1.9
100
88
1
286
34
15
17
33
1.91
36065--36133
22
3.1
22
75
19
63
14
0
14
71
1.16
36064--36095
6
5.7
6
92
7
50
15
0
15
68
1.21
36076--36139
17
3.9
17
75
19
55
14
0
14
71
1.14
36515--36540
11
2.4
11
100
0
52
7
7
0
84
0.77
36492--36528
8
4.6
8
100
0
74
10
10
0
78
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36492--36557
8
7.5
8
77
17
51
7
13
0
78
0.94
36492--36539
16
2.7
19
90
9
75
10
10
0
79
0.95
36499--36557
27
2.2
27
85
11
77
6
13
0
79
0.92

Tables:   1

The End!