genome.fa.s13283.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013283.1 Corchorus olitorius cultivar O-4 contig13316, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59667

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4320--4355	18	2.1	18	89	5	56	44	5	11	38	1.63
4873--4902	16	1.9	15	93	6	51	36	3	13	46	1.60
7569--7623	24	2.2	25	83	6	67	50	9	9	30	1.65
9239--9278	19	2.2	19	90	4	64	32	20	2	45	1.64
9831--9964	64	2.1	64	91	0	214	24	16	21	37	1.93
9895--10171	95	2.9	96	83	5	362	20	18	23	37	1.94
9771--10086	159	2.0	161	86	5	451	22	18	22	37	1.94
9895--10223	99	3.4	97	80	7	325	21	18	22	37	1.95
10151--10278	35	3.7	35	83	6	147	22	22	18	35	1.95
10278--10379	51	2.0	51	86	3	143	21	16	17	44	1.87
10353--10789	8	54.1	8	69	9	217	28	18	6	45	1.74
10356--10493	22	6.1	22	71	21	99	29	19	4	46	1.69
10355--10730	24	15.6	24	76	8	320	28	18	6	45	1.75
10738--10791	19	3.0	19	78	7	51	25	20	5	48	1.71
10925--11059	68	2.0	67	81	4	155	25	17	12	44	1.84
11201--11297	32	3.1	32	84	1	133	32	18	21	26	1.97
13178--13210	7	4.9	7	85	7	50	15	0	0	84	0.61
19682--19836	46	3.4	46	97	0	283	44	10	20	24	1.83
43925--44078	77	2.0	74	90	6	238	35	11	18	34	1.88
44122--44174	27	2.0	27	96	0	97	41	24	16	16	1.89
44126--44190	27	2.4	27	84	2	85	40	29	15	15	1.88
44707--45614	30	30.2	30	81	5	906	48	18	13	19	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44914--44993	41	2.0	41	92	0	133	52	17	12	17	1.74
44884--45023	71	2.0	71	88	2	210	52	18	12	17	1.75
45946--46146	36	5.6	36	83	0	258	45	15	15	22	1.84
45968--46146	72	2.5	72	94	0	304	45	14	16	23	1.84
47599--47639	16	2.5	17	80	7	50	36	7	4	51	1.51
47599--47635	17	2.2	17	90	0	56	32	8	2	56	1.43
55516--55558	21	2.0	22	86	4	61	23	27	13	34	1.93

Tables:   1

The End!