Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013284.1 Corchorus olitorius cultivar O-4 contig13317, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7191
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32


Found at i:2212 original size:21 final size:22

Alignment explanation


    Indices: 2173--2213  Score: 57
    Period size: 21  Copynumber: 1.9  Consensus size: 22

       2163 TCAAAGCTTT

                         **       
       2173 AGGAATGCAAGAGGGATTTCAA
          1 AGGAATGCAAGAGCCATTTCAA

                                
       2195 AGGAA-GCAAGAGCCATTTC
          1 AGGAATGCAAGAGCCATTTC

       2214 CAAGAAGGTA


Statistics
Matches: 17,  Mismatches: 2, Indels: 1
        0.85            0.10        0.05

Matches are distributed among these distances:
  21   12  0.71
  22    5  0.29

ACGTcount: A:0.39, C:0.15, G:0.29, T:0.17


Consensus pattern (22 bp):   
AGGAATGCAAGAGCCATTTCAA

Found at i:7116 original size:4 final size:4

Alignment explanation


    Indices: 7109--7135  Score: 54
    Period size: 4  Copynumber: 6.8  Consensus size: 4

       7099 TAAAAAAAAC

                                             
       7109 AATT AATT AATT AATT AATT AATT AAT
          1 AATT AATT AATT AATT AATT AATT AAT

       7136 AAAAGGAAAA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   23  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (4 bp):   
AATT

Done.