Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001329.1 Corchorus olitorius cultivar O-4 contig01329, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 655

Length: 1092
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26


Found at i:686 original size:32 final size:32

Alignment explanation


    Indices: 631--720  Score: 135
    Period size: 32  Copynumber: 2.8  Consensus size: 32

        621 ACAAATTAGC

                   **       * *             
        631 GGCGTTTACTTCAATAAAGGCCGCTAAATAAG
          1 GGCGTTTGTTTCAATAGACGCCGCTAAATAAG

                       *                    
        663 GGCGTTTGTTTGAATAGACGCCGCTAAATAAG
          1 GGCGTTTGTTTCAATAGACGCCGCTAAATAAG

                                      
        695 GGCGTTTGTTTCAATAGACGCCGCTA
          1 GGCGTTTGTTTCAATAGACGCCGCTA

        721 TTTTCCAGCA


Statistics
Matches: 52,  Mismatches: 6, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  32   52  1.00

ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28


Consensus pattern (32 bp):   
GGCGTTTGTTTCAATAGACGCCGCTAAATAAG
Done.