Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013294.1 Corchorus olitorius cultivar O-4 contig13327, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 743

Length: 1239
ACGTcount: A:0.39, C:0.11, G:0.12, T:0.38


Found at i:233 original size:12 final size:12

Alignment explanation


    Indices: 216--240  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

        206 TTATTGGGTG

                        
        216 AAATAATGGAGA
          1 AAATAATGGAGA

                        
        228 AAATAATGGAGA
          1 AAATAATGGAGA

             
        240 A
          1 A

        241 TCATTTGACC


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.60, C:0.00, G:0.24, T:0.16


Consensus pattern (12 bp):   
AAATAATGGAGA
Done.